to be published
Jinsung Jang et al., “Immunophenotyping Using Single-Cell Mass Cytometry on Peripheral Blood Identifies Cell Subpopulations Associated with Primary Biliary Cholangitis”. in prep.

Vinod Gupta et al., “Microbial Signatures of Gut Wellness through Multi-study Integration of Human Stool Metagenomes”. in prep.

The Influence of Patient Factors on Reproductive Tract Microbiota Composition and Endometrial Cancer”. Dana M. Walsh*, Alexis N. Hokenstad*, Jun Chen, Jaeyun Sung, Gregory D. Jenkins, Nicholas Chia, Heidi Nelson, Andrea Mariani#, Marina R. S. Walther-Antonio#. submitted.

Fecal Metabolomic Signatures in Colorectal Adenoma Patients are Associated with Gut microbiota and Early Events of Colorectal Cancer Pathogenesis”. Minsuk Kim*, Emily Vogtmann*, David A. Ahlquist, Mary E. Devens, John B. Kisiel, William R. Taylor, Vanessa L. Hale, Jaeyun Sung, Nicholas Chia#, Rashmi Sinha#, Jun Chen. submitted.

Large-scale Metabolic Interaction Network of the Mouse and Human Gut Microbiota”. Josephine Jill T. Cabatbat*, Roktaek Lim*, Seunghyeon Kim, Jaeyun Sung, and Pan-Jun Kim. submitted.

Vanessa L. Hale, Patricio Jeraldo, Jun Chen, Michael Mundy, Janet Yao, Sambhawa Priya, Gary Keeney, Kelly Lyke, Jason Ridlon, Bryan A. White, Amy J. French, Stephen N. Thibodeau, Christian Diener, Osbaldo Resendis-Antonio, Jaime Granse, Tumpa Dutta, Xuan-Mai Petterson, Jaeyun Sung, Ran Blekhman, Lisa Boardman, David Larson, Heidi Nelson, and Nicholas Chia. “Distinct Microbes, Metabolites, and Ecologies Define the Microbiome in Deficient and Proficient Mismatch Repair Colorectal Cancers”, Genome Medicine, 10:78 (2018) [html] [pdf]

Pamela S. Tietz-Bogert*, Minsuk Kim*, Angela Cheung, James H. Tabibian, Madhumitha Nandakumar, Elizabeth Halvorsen, Julie K. Heimbach, Charles B. Rosen, Konstantinos N. Lazaridis, Nicholas F. LaRusso, Jaeyun Sung#, and Steven P. O’Hara#. “Metabolomic Profiling of Portal Serum and Bile Reveals Metabolic Signatures in Patients with Primary Sclerosing Cholangitis”, International Journal of Molecular Sciences, 19(10), 3188 (2018) [html] [pdf]

———— with previous affiliations ————

Christopher S. Smillie, Jenny Sauk, Dirk Gevers, Jonathan Friedman, Jaeyun Sung, Ilan Youngster, Elizabeth L. Hohmann, Christopher Staley, Alexander Khoruts, Michael J. Sadowsky, Jessica R. Allegretti, Mark B. Smith, Ramnik J. Xavier, and Eric J. Alm. “Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation”, Cell Host and Microbe, 23, 229–240 (2018) [html] [pdf]

Jaeyun Sung, Seunghyeon Kim, Josephine Jill T. Cabatbat, SungHo Jang, Yong-Su Jin, Gyoo Yeol Jung, Nicholas Chia, and Pan-Jun Kim. “Global Metabolic Interaction Network of the Human Gut Microbiota for Context-specific Community-scale Analysis”, Nature Communications, 10.1038/ncomms15393 (2017) [html] [pdf]

Jaeyun Sung, Vanessa Hale, Annette C. Merkel, Vanessa Hale, Pan-Jun Kim, and Nicholas Chia. “Metabolic Modeling with Big Data and the Gut Microbiome”, Applied and Translational Genomics (2016) [html] [pdf]

Jun-Seob Kim, Da-Hyeong Cho, Paul Heo, Suk-Chae Jung, Myungseo Park, Eun Joong Oh, Jaeyun Sung, Pan-Jun Kim, Sukchan Lee, Dae-Hee Lee, Sarah Lee, Choong Hwan Lee, Dongwoo Shin, Yong-Su Jin, and Dae-Hyuk Kweon. “Fumarate-mediated Persistence of Escherichia coli to Antibiotics”, Antimicrobial Agents and Chemotherapy, 60(4):2232-40 (2016) [html] [pdf]

Seunghyeon Kim, Jaeyun Sung, Mathias Foo, Yong-Su Jin, and Pan-Jun Kim. “Uncovering the Nutritional Landscape of Food”, PLoS ONE, 10(3): e0118697 (2015) [html] [pdf]

Shuyi Ma, Jaeyun Sung, Andrew T. Magis, Yuliang Wang, Donald Geman, Nathan D. Price. “Measuring the Effect of Inter-study Variability on Learning Molecular Signatures”, PLoS ONE, 9(10): e110840 (2014) [html] [pdf]

Christopher Lausted, Inyoul Lee, Yong Zhou, Shizhen Qin, Jaeyun Sung, Nathan D. Price, Leroy Hood, and Kai Wang. “Systems Approach to Neurodegenerative Disease Biomarker Discovery”, Annual Reviews of Pharmacology and Toxicology, 54:457-481 (2014) [html] [pdf]

Jaeyun Sung, Pan-Jun Kim, Shuyi Ma, Cory C. Funk, Andrew T. Magis, Yuliang Wang, Leroy Hood, Donald Geman, and Nathan D. Price. “Multi-study Integration of Brain Cancer Transcriptomes Reveals Organ-Level Molecular Signatures”, PLoS Computational Biology, 9(7): e1003148 (2013) [html] [pdf]

Jaeyun Sung, Yuliang Wang, Sriram Chandrasekaran, Daniella M. Witten, and Nathan D. Price. “Molecular Signatures from Omics Data: from Chaos to Consensus”, Biotechnology Journal, 7(8):946-57 (2012) [html] [pdf]

James A. Eddy, Jaeyun Sung, Donald Geman, and Nathan D. Price. “Gene-pair Relative Expression Analysis for Cancer Diagnosis and Prognosis”, Technology in Cancer Research and Treatment, 9(2):149-159 (2010) [html] [pdf]

MAQC Consortium (including Jaeyun Sung). “The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models”, Nature Biotechnology, 28:827:838 (2010) [html] [pdf]

Jaeyun Sung, Paul W. Barone, Hyunjoon Kong, and Michael S. Strano. “Sequential Delivery  of Dexamethasone and VEGF to Control Local Tissue Response for Carbon Nanotube Fluorescence Based Micro-capillary Implantable Sensors”, Biomaterials, 30(4): 622-631 (2009) [html] [pdf]

Nathan D. Price, Leroy Hood, Jaeyun Sung, and Donald Geman. “Detection of Brain Cancer Types” US Patent #20150252429
Nathan D. Price, Leroy Hood, Jaeyun Sung, and Donald Geman. “Detection of Brain Cancer Types” WIPO Patent #WO/2014/071082 A2